From e97c77f3648fefd532bbfce79857d910b62a8e42 Mon Sep 17 00:00:00 2001 From: "Erica Y. Scott" Date: Wed, 25 Mar 2020 12:31:05 -0400 Subject: [PATCH] Update README.md --- README.md | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 829e395..2ff6c1e 100644 --- a/README.md +++ b/README.md @@ -9,14 +9,17 @@ The provided scripts go through mapping, parsing fasta headers (barcodes and UMI 2. Align with Star Aligner 3. Collapse redundant UMIs 4. Parse and separate unique cell barcodes -5. Gather gene count data (FeatureCounts) +5. Gather gene count data (FeatureCounts) + RFigureScripts: TPM normalization, figure generation, DGE with EdgeR, UMAP implementation + DependentScripts: FeatureCounts and barcode demuliplexing scripts. ## Publication -pending +pending: +*Lamanna, J.*,*Scott, E.Y.*, *Edwards, H.*, Chamberlain, M.D., Dryden, M.D.M., Peng, J., Mair, B., Lee, A., Sklavounos, A.A., Abbas, F., Moffat, J. & A.R. Wheeler. "Digital Microfluidic Isolation of Single Cells for - Omics" 2020. + *Lamanna, J.,Scott, E.Y., Edwards, H. are Co-first authors* ### Authors of scripts -Erica Y. Scott: Scripts 1-5 and Figure scripts 1-7 - +Erica Y. Scott: Scripts 1-5 and Figure scripts 1-7 Harrison Edwards: python barcode parser scripts within DependentScripts/ -- GitLab