diff --git a/.gitignore b/.gitignore
index 8df98e2ff005c5aa546018e7d3d46d199d5fed96..bc7453473705cbaf6a772e13df5d45c1d3891700 100644
--- a/.gitignore
+++ b/.gitignore
@@ -4,6 +4,7 @@ Breakpoints_v2.xcbkptlist
*.c
*.so
*.pyc
+*.pyo
*~
/dstatInterface/dist/
/dstatInterface/build/
diff --git a/dstat-interface/dstat-interface/interface_test.py b/dstat-interface/dstat-interface/interface_test.py
index abca328e397154c6b03f2ba4c5b572e8f2e954ec..01cb8bba025591a584b9a4365f80b60469899221 100644
--- a/dstat-interface/dstat-interface/interface_test.py
+++ b/dstat-interface/dstat-interface/interface_test.py
@@ -1,22 +1,22 @@
#!/usr/bin/env python
# -*- coding: utf-8 -*-
+""" GUI Interface for Wheeler Lab DStat """
import sys
try:
import pygtk
pygtk.require('2.0')
-except:
- pass
+except ImportError:
+ print('PyGTK 2.0 not available')
+ sys.exit(1)
try:
import gtk
- import gobject
-except:
+except ImportError:
print('GTK not available')
sys.exit(1)
-
try:
import gobject
-except:
+except ImportError:
print('gobject not available')
sys.exit(1)
@@ -30,30 +30,31 @@ import interface.acv as acv
import interface.pd as pd
import interface.save as save
import dstat_comm as comm
+import mpltest
+import microdrop
+
from serial import SerialException
import multiprocessing
import time
-import mpltest
-import microdrop
-
class Error(Exception):
+ """Copies Exception class"""
pass
class InputError(Error):
- """Exception raised for errors in the input.
+ """Exception raised for errors in the input. Extends Error class.
- Attributes:
+ Attributes:
expr -- input expression in which the error occurred
msg -- error message
- """
+ """
def __init__(self, expr, msg):
self.expr = expr
self.msg = msg
-class main:
-
+class Main:
+ """Main program """
def __init__(self):
self.builder = gtk.Builder()
self.builder.add_from_file('interface/dstatinterface.glade')
@@ -71,11 +72,11 @@ class main:
self.adc_pot = adc_pot.adc_pot()
self.chronoamp = chronoamp.chronoamp()
self.lsv = lsv.lsv()
- self.cv = cv.cv()
+ self.cve = cv.cv()
self.swv = swv.swv()
self.dpv = dpv.dpv()
self.acv = acv.acv()
- self.pd = pd.pd()
+ self.pde = pd.pd()
self.error_context_id = self.statusbar.get_context_id("error")
self.message_context_id = self.statusbar.get_context_id("message")
@@ -91,20 +92,21 @@ class main:
#fill exp_section
self.exp_section = self.builder.get_object('exp_section_box')
- self.chronoamp_container = self.chronoamp.builder.get_object('scrolledwindow1')
+ self.chronoamp_container = self.chronoamp.builder.get_object(
+ 'scrolledwindow1')
self.chronoamp_container.reparent(self.exp_section)
self.lsv_container = self.lsv.builder.get_object('scrolledwindow1')
self.lsv_container.reparent(self.exp_section)
- self.cv_container = self.cv.builder.get_object('scrolledwindow1')
- self.cv_container.reparent(self.exp_section)
+ self.cve_container = self.cve.builder.get_object('scrolledwindow1')
+ self.cve_container.reparent(self.exp_section)
self.swv_container = self.swv.builder.get_object('scrolledwindow1')
self.swv_container.reparent(self.exp_section)
self.dpv_container = self.dpv.builder.get_object('scrolledwindow1')
self.dpv_container.reparent(self.exp_section)
self.acv_container = self.acv.builder.get_object('scrolledwindow1')
self.acv_container.reparent(self.exp_section)
- self.pd_container = self.pd.builder.get_object('scrolledwindow1')
- self.pd_container.reparent(self.exp_section)
+ self.pde_container = self.pde.builder.get_object('scrolledwindow1')
+ self.pde_container.reparent(self.exp_section)
#fill adc_pot_box
self.adc_pot_box = self.builder.get_object('gain_adc_box')
@@ -136,30 +138,37 @@ class main:
self.mainwindow.set_title("Dstat Interface 0.1")
self.mainwindow.show_all()
- ##hide unused experiment controls
+ # hide unused experiment controls
#self.chronoamp_container.hide()
self.lsv_container.hide()
- self.cv_container.hide()
+ self.cve_container.hide()
self.swv_container.hide()
self.dpv_container.hide()
self.acv_container.hide()
- self.pd_container.hide()
+ self.pde_container.hide()
self.expnumber = 0
- self.menu_dropbot_connect = self.builder.get_object('menu_dropbot_connect')
- self.menu_dropbot_disconnect = self.builder.get_object('menu_dropbot_disconnect')
+ self.menu_dropbot_connect = self.builder.get_object(
+ 'menu_dropbot_connect')
+ self.menu_dropbot_disconnect = self.builder.get_object(
+ 'menu_dropbot_disconnect')
self.dropbot_enabled = False
self.dropbot_triggered = False
def exp_param_show(self, selection):
+ """Changes parameter tab to selected experiment.
+
+ Arguments:
+ selection -- integer index of experiment type
+ """
self.chronoamp_container.hide()
self.lsv_container.hide()
- self.cv_container.hide()
+ self.cve_container.hide()
self.swv_container.hide()
self.dpv_container.hide()
self.acv_container.hide()
- self.pd_container.hide()
+ self.pde_container.hide()
self.statusbar.remove_all(self.error_context_id)
@@ -168,7 +177,7 @@ class main:
elif selection == 1:
self.lsv_container.show()
elif selection == 2:
- self.cv_container.show()
+ self.cve_container.show()
elif selection == 3:
self.swv_container.show()
elif selection == 4:
@@ -176,27 +185,33 @@ class main:
elif selection == 5:
self.acv_container.show()
elif selection == 6:
- self.pd_container.show()
+ self.pde_container.show()
else:
- self.statusbar.push(self.error_context_id, "Experiment not yet implemented")
+ self.statusbar.push(
+ self.error_context_id, "Experiment not yet implemented")
def on_window1_destroy(self, object, data=None):
+ """ Quit when main window closed."""
print "quit with cancel"
gtk.main_quit()
def on_gtk_quit_activate(self, menuitem, data=None):
+ """Quit when Quit selected from menu."""
print "quit from menu"
gtk.main_quit()
def on_gtk_about_activate(self, menuitem, data=None):
+ """Display the about window."""
print "help about selected"
- self.response = self.aboutdialog.run() #waits for user to click close
+ self.response = self.aboutdialog.run() # waits for user to click close
self.aboutdialog.hide()
def on_expcombobox_changed(self, data=None):
- self.exp_param_show(self.expcombobox.get_active())
+ """Change the experiment window when experiment box changed."""
+ self.exp_param_show(self.expcombobox.get_active)
def on_serial_refresh_clicked(self, data=None):
+ """Refresh list of serial devices."""
self.serial_devices.refresh()
self.serial_liststore.clear()
@@ -204,21 +219,22 @@ class main:
self.serial_liststore.append([i])
def on_pot_start_clicked(self, data=None):
-
- def exceptions(): #cleans up after errors
+ """Run currently visible experiment."""
+ def exceptions():
+ """ Cleans up after errors """
if self.dropbot_enabled == True:
if self.dropbot_triggered == True:
self.dropbot_triggered = False
print "finallydone"
self.microdrop.reply(microdrop.EXPFINISHED)
- self.microdrop_proc = gobject.timeout_add(500, self.microdrop_listen)
+ self.microdrop_proc = gobject.timeout_add(500,
+ self.microdrop_listen)
self.spinner.stop()
self.startbutton.set_sensitive(True)
self.stopbutton.set_sensitive(False)
selection = self.expcombobox.get_active()
parameters = {}
- view_parameters = {}
if self.adc_pot.buffer_toggle.get_active(): #True if box checked
parameters['adc_buffer'] = "2"
@@ -229,9 +245,12 @@ class main:
pga_model = self.adc_pot.pga_combobox.get_model()
gain_model = self.adc_pot.gain_combobox.get_model()
- parameters['adc_rate'] = srate_model.get_value(self.adc_pot.srate_combobox.get_active_iter(), 2) #third column
- parameters['adc_pga'] = pga_model.get_value(self.adc_pot.pga_combobox.get_active_iter(), 2)
- parameters['gain'] = gain_model.get_value(self.adc_pot.gain_combobox.get_active_iter(), 2)
+ parameters['adc_rate'] = srate_model.get_value(
+ self.adc_pot.srate_combobox.get_active_iter(), 2) # third column
+ parameters['adc_pga'] = pga_model.get_value(
+ self.adc_pot.pga_combobox.get_active_iter(), 2)
+ parameters['gain'] = gain_model.get_value(
+ self.adc_pot.gain_combobox.get_active_iter(), 2)
self.line = 0
self.lastline = 0
@@ -243,12 +262,15 @@ class main:
self.statusbar.remove_all(self.error_context_id)
try:
- if selection == 0: #CA
- parameters['potential'] = [int(r[0]) for r in self.chronoamp.model]
- parameters['time'] = [int(r[1]) for r in self.chronoamp.model]
+ if selection == 0: # CA
+ parameters['potential'] = [int(r[0]) for r
+ in self.chronoamp.model]
+ parameters['time'] = [int(r[1]) for r
+ in self.chronoamp.model]
if not parameters['potential']:
- raise InputError(parameters['potential'],"Step table is empty")
+ raise InputError(parameters['potential'],
+ "Step table is empty")
self.recv_p, self.send_p = multiprocessing.Pipe(duplex=True)
self.current_exp = comm.chronoamp(parameters, self.send_p)
@@ -261,15 +283,17 @@ class main:
for i in self.current_exp.commands:
self.rawbuffer.insert_at_cursor(i)
- self.current_exp.run_wrapper(self.serial_liststore.get_value(self.serial_combobox.get_active_iter(), 0))
-
- self.send_p.close() #need to close this copy of connection object for EOF signal to work
+ self.current_exp.run_wrapper(self.serial_liststore.get_value(
+ self.serial_combobox.get_active_iter(), 0))
+
+ self.send_p.close() # need for EOF signal to work
- self.plot_proc = gobject.timeout_add(200, self.experiment_running_plot)
+ self.plot_proc = gobject.timeout_add(200,
+ self.experiment_running_plot)
gobject.idle_add(self.experiment_running)
return
- elif selection == 1: #LSV
+ elif selection == 1: # LSV
parameters['clean_mV'] = int(self.lsv.clean_mV.get_text())
parameters['clean_s'] = int(self.lsv.clean_s.get_text())
parameters['dep_mV'] = int(self.lsv.dep_mV.get_text())
@@ -279,22 +303,32 @@ class main:
parameters['slope'] = int(self.lsv.slope_entry.get_text())
#check parameters are within hardware limits
- if (parameters['clean_mV'] > 1499 or parameters['clean_mV'] < -1500):
- raise InputError(parameters['clean_mV'],"Clean potential exceeds hardware limits.")
- if (parameters['dep_mV'] > 1499 or parameters['dep_mV'] < -1500):
- raise InputError(parameters['dep_mV'],"Deposition potential exceeds hardware limits.")
+ if (parameters['clean_mV'] > 1499 or
+ parameters['clean_mV'] < -1500):
+ raise InputError(parameters['clean_mV'],
+ "Clean potential exceeds hardware limits.")
+ if (parameters['dep_mV'] > 1499 or
+ parameters['dep_mV'] < -1500):
+ raise InputError(parameters['dep_mV'],
+ "Deposition potential exceeds hardware limits.")
if (parameters['clean_s'] < 0):
- raise InputError(parameters['clean_s'],"Clean time cannot be negative.")
+ raise InputError(parameters['clean_s'],
+ "Clean time cannot be negative.")
if (parameters['dep_s'] < 0):
- raise InputError(parameters['dep_s'],"Deposition time cannot be negative.")
+ raise InputError(parameters['dep_s'],
+ "Deposition time cannot be negative.")
if (parameters['start'] > 1499 or parameters['start'] < -1500):
- raise InputError(parameters['start'],"Start parameter exceeds hardware limits.")
+ raise InputError(parameters['start'],
+ "Start parameter exceeds hardware limits.")
if (parameters['stop'] > 1499 or parameters['stop'] < -1500):
- raise InputError(parameters['stop'],"Stop parameter exceeds hardware limits.")
+ raise InputError(parameters['stop'],
+ "Stop parameter exceeds hardware limits.")
if (parameters['slope'] > 2000 or parameters['slope'] < 1):
- raise InputError(parameters['slope'],"Slope parameter exceeds hardware limits.")
+ raise InputError(parameters['slope'],
+ "Slope parameter exceeds hardware limits.")
if parameters['start'] == parameters['stop']:
- raise InputError(parameters['start'],"Start cannot equal Stop.")
+ raise InputError(parameters['start'],
+ "Start cannot equal Stop.")
self.recv_p, self.send_p = multiprocessing.Pipe(duplex=True)
self.current_exp = comm.lsv_exp(parameters, self.send_p)
@@ -307,46 +341,61 @@ class main:
for i in self.current_exp.commands:
self.rawbuffer.insert_at_cursor(i)
- self.current_exp.run_wrapper(self.serial_liststore.get_value(self.serial_combobox.get_active_iter(), 0))
+ self.current_exp.run_wrapper(
+ self.serial_liststore.get_value(
+ self.serial_combobox.get_active_iter(), 0))
self.send_p.close()
- self.plot_proc = gobject.timeout_add(200, self.experiment_running_plot)
+ self.plot_proc = gobject.timeout_add(200,
+ self.experiment_running_plot)
gobject.idle_add(self.experiment_running)
return
- elif selection == 2: #CV
- parameters['clean_mV'] = int(self.cv.clean_mV.get_text())
- parameters['clean_s'] = int(self.cv.clean_s.get_text())
- parameters['dep_mV'] = int(self.cv.dep_mV.get_text())
- parameters['dep_s'] = int(self.cv.dep_s.get_text())
- parameters['start'] = int(self.cv.start_entry.get_text())
- parameters['slope'] = int(self.cv.slope_entry.get_text())
- parameters['v1'] = int(self.cv.v1_entry.get_text())
- parameters['v2'] = int(self.cv.v2_entry.get_text())
- parameters['scans'] = int(self.cv.scans_entry.get_text())
+ elif selection == 2: # CV
+ parameters['clean_mV'] = int(self.cve.clean_mV.get_text())
+ parameters['clean_s'] = int(self.cve.clean_s.get_text())
+ parameters['dep_mV'] = int(self.cve.dep_mV.get_text())
+ parameters['dep_s'] = int(self.cve.dep_s.get_text())
+ parameters['start'] = int(self.cve.start_entry.get_text())
+ parameters['slope'] = int(self.cve.slope_entry.get_text())
+ parameters['v1'] = int(self.cve.v1_entry.get_text())
+ parameters['v2'] = int(self.cve.v2_entry.get_text())
+ parameters['scans'] = int(self.cve.scans_entry.get_text())
- #check parameters are within hardware limits
- if (parameters['clean_mV'] > 1499 or parameters['clean_mV'] < -1500):
- raise InputError(parameters['clean_mV'],"Clean potential exceeds hardware limits.")
- if (parameters['dep_mV'] > 1499 or parameters['dep_mV'] < -1500):
- raise InputError(parameters['dep_mV'],"Deposition potential exceeds hardware limits.")
+ # check parameters are within hardware limits
+ if (parameters['clean_mV'] > 1499 or
+ parameters['clean_mV'] < -1500):
+ raise InputError(parameters['clean_mV'],
+ "Clean potential exceeds hardware limits.")
+ if (parameters['dep_mV'] > 1499 or
+ parameters['dep_mV'] < -1500):
+ raise InputError(parameters['dep_mV'],
+ "Deposition potential exceeds hardware limits.")
if (parameters['clean_s'] < 0):
- raise InputError(parameters['clean_s'],"Clean time cannot be negative.")
+ raise InputError(parameters['clean_s'],
+ "Clean time cannot be negative.")
if (parameters['dep_s'] < 0):
- raise InputError(parameters['dep_s'],"Deposition time cannot be negative.")
+ raise InputError(parameters['dep_s'],
+ "Deposition time cannot be negative.")
if (parameters['start'] > 1499 or parameters['start'] < -1500):
- raise InputError(parameters['start'],"Start parameter exceeds hardware limits.")
+ raise InputError(parameters['start'],
+ "Start parameter exceeds hardware limits.")
if (parameters['slope'] > 2000 or parameters['slope'] < 1):
- raise InputError(parameters['slope'],"Slope parameter exceeds hardware limits.")
+ raise InputError(parameters['slope'],
+ "Slope parameter exceeds hardware limits.")
if (parameters['v1'] > 1499 or parameters['v1'] < -1500):
- raise InputError(parameters['v1'],"Vertex 1 parameter exceeds hardware limits.")
+ raise InputError(parameters['v1'],
+ "Vertex 1 parameter exceeds hardware limits.")
if (parameters['v2'] > 1499 or parameters['v2'] < -1500):
- raise InputError(parameters['v2'],"Vertex 2 parameter exceeds hardware limits.")
+ raise InputError(parameters['v2'],
+ "Vertex 2 parameter exceeds hardware limits.")
if (parameters['scans'] < 1 or parameters['scans'] > 255):
- raise InputError(parameters['scans'], "Scans parameter outside limits.")
+ raise InputError(parameters['scans'],
+ "Scans parameter outside limits.")
if parameters['v1'] == parameters['v2']:
- raise InputError(parameters['v1'],"Vertex 1 cannot equal Vertex 2.")
+ raise InputError(parameters['v1'],
+ "Vertex 1 cannot equal Vertex 2.")
self.recv_p, self.send_p = multiprocessing.Pipe(duplex=True)
self.current_exp = comm.cv_exp(parameters, self.send_p)
@@ -359,15 +408,18 @@ class main:
for i in self.current_exp.commands:
self.rawbuffer.insert_at_cursor(i)
- self.current_exp.run_wrapper(self.serial_liststore.get_value(self.serial_combobox.get_active_iter(), 0))
+ self.current_exp.run_wrapper(
+ self.serial_liststore.get_value(
+ self.serial_combobox.get_active_iter(), 0))
self.send_p.close()
- self.plot_proc = gobject.timeout_add(200, self.experiment_running_plot)
+ self.plot_proc = gobject.timeout_add(200,
+ self.experiment_running_plot)
gobject.idle_add(self.experiment_running)
return
- elif selection == 3: #SWV
+ elif selection == 3: # SWV
parameters['clean_mV'] = int(self.swv.clean_mV.get_text())
parameters['clean_s'] = int(self.swv.clean_s.get_text())
parameters['dep_mV'] = int(self.swv.dep_mV.get_text())
@@ -381,31 +433,46 @@ class main:
if self.swv.cyclic_checkbutton.get_active():
parameters['scans'] = int(self.swv.scans_entry.get_text())
if parameters['scans'] < 1:
- raise InputError(parameters['scans'],"Must have at least one scan.")
+ raise InputError(parameters['scans'],
+ "Must have at least one scan.")
else:
parameters['scans'] = 0
- #check parameters are within hardware limits (doesn't check if pulse will go out of bounds, but instrument checks this (I think))
- if (parameters['clean_mV'] > 1499 or parameters['clean_mV'] < -1500):
- raise InputError(parameters['clean_mV'],"Clean potential exceeds hardware limits.")
- if (parameters['dep_mV'] > 1499 or parameters['dep_mV'] < -1500):
- raise InputError(parameters['dep_mV'],"Deposition potential exceeds hardware limits.")
+ # check parameters are within hardware limits (doesn't
+ # check if pulse will go out of bounds, but instrument
+ # checks this (I think))
+ if (parameters['clean_mV'] > 1499 or
+ parameters['clean_mV'] < -1500):
+ raise InputError(parameters['clean_mV'],
+ "Clean potential exceeds hardware limits.")
+ if (parameters['dep_mV'] > 1499 or
+ parameters['dep_mV'] < -1500):
+ raise InputError(parameters['dep_mV'],
+ "Deposition potential exceeds hardware limits.")
if (parameters['clean_s'] < 0):
- raise InputError(parameters['clean_s'],"Clean time cannot be negative.")
+ raise InputError(parameters['clean_s'],
+ "Clean time cannot be negative.")
if (parameters['dep_s'] < 0):
- raise InputError(parameters['dep_s'],"Deposition time cannot be negative.")
+ raise InputError(parameters['dep_s'],
+ "Deposition time cannot be negative.")
if (parameters['start'] > 1499 or parameters['start'] < -1500):
- raise InputError(parameters['start'],"Start parameter exceeds hardware limits.")
+ raise InputError(parameters['start'],
+ "Start parameter exceeds hardware limits.")
if (parameters['step'] > 200 or parameters['step'] < 1):
- raise InputError(parameters['step'],"Step height parameter exceeds hardware limits.")
+ raise InputError(parameters['step'],
+ "Step height parameter exceeds hardware limits.")
if (parameters['stop'] > 1499 or parameters['stop'] < -1500):
- raise InputError(parameters['stop'],"Stop parameter exceeds hardware limits.")
+ raise InputError(parameters['stop'],
+ "Stop parameter exceeds hardware limits.")
if (parameters['pulse'] > 150 or parameters['pulse'] < 1):
- raise InputError(parameters['pulse'],"Pulse height parameter exceeds hardware limits.")
+ raise InputError(parameters['pulse'],
+ "Pulse height parameter exceeds hardware limits.")
if (parameters['freq'] < 1 or parameters['freq'] > 1000):
- raise InputError(parameters['freq'], "Frequency parameter outside limits.")
+ raise InputError(parameters['freq'],
+ "Frequency parameter outside limits.")
if parameters['start'] == parameters['stop']:
- raise InputError(parameters['start'],"Start cannot equal Stop.")
+ raise InputError(parameters['start'],
+ "Start cannot equal Stop.")
self.recv_p, self.send_p = multiprocessing.Pipe(duplex=True)
self.current_exp = comm.swv_exp(parameters, self.send_p)
@@ -418,15 +485,18 @@ class main:
for i in self.current_exp.commands:
self.rawbuffer.insert_at_cursor(i)
- self.current_exp.run_wrapper(self.serial_liststore.get_value(self.serial_combobox.get_active_iter(), 0))
+ self.current_exp.run_wrapper(
+ self.serial_liststore.get_value(
+ self.serial_combobox.get_active_iter(), 0))
self.send_p.close()
- self.plot_proc = gobject.timeout_add(200, self.experiment_running_plot)
+ self.plot_proc = gobject.timeout_add(200,
+ self.experiment_running_plot)
gobject.idle_add(self.experiment_running)
return
- elif selection == 4: #DPV
+ elif selection == 4: # DPV
parameters['clean_mV'] = int(self.dpv.clean_mV.get_text())
parameters['clean_s'] = int(self.dpv.clean_s.get_text())
parameters['dep_mV'] = int(self.dpv.dep_mV.get_text())
@@ -438,31 +508,44 @@ class main:
parameters['period'] = int(self.dpv.period_entry.get_text())
parameters['width'] = int(self.dpv.width_entry.get_text())
- #check parameters are within hardware limits (doesn't check if pulse will go out of bounds, but instrument checks this (I think))
- if (parameters['clean_mV'] > 1499 or parameters['clean_mV'] < -1500):
- raise InputError(parameters['clean_mV'],"Clean potential exceeds hardware limits.")
- if (parameters['dep_mV'] > 1499 or parameters['dep_mV'] < -1500):
- raise InputError(parameters['dep_mV'],"Deposition potential exceeds hardware limits.")
+ if (parameters['clean_mV'] > 1499 or
+ parameters['clean_mV'] < -1500):
+ raise InputError(parameters['clean_mV'],
+ "Clean potential exceeds hardware limits.")
+ if (parameters['dep_mV'] > 1499 or
+ parameters['dep_mV'] < -1500):
+ raise InputError(parameters['dep_mV'],
+ "Deposition potential exceeds hardware limits.")
if (parameters['clean_s'] < 0):
- raise InputError(parameters['clean_s'],"Clean time cannot be negative.")
+ raise InputError(parameters['clean_s'],
+ "Clean time cannot be negative.")
if (parameters['dep_s'] < 0):
- raise InputError(parameters['dep_s'],"Deposition time cannot be negative.")
+ raise InputError(parameters['dep_s'],
+ "Deposition time cannot be negative.")
if (parameters['start'] > 1499 or parameters['start'] < -1500):
- raise InputError(parameters['start'],"Start parameter exceeds hardware limits.")
+ raise InputError(parameters['start'],
+ "Start parameter exceeds hardware limits.")
if (parameters['step'] > 200 or parameters['step'] < 1):
- raise InputError(parameters['step'],"Step height parameter exceeds hardware limits.")
+ raise InputError(parameters['step'],
+ "Step height parameter exceeds hardware limits.")
if (parameters['stop'] > 1499 or parameters['stop'] < -1500):
- raise InputError(parameters['stop'],"Stop parameter exceeds hardware limits.")
+ raise InputError(parameters['stop'],
+ "Stop parameter exceeds hardware limits.")
if (parameters['pulse'] > 150 or parameters['pulse'] < 1):
- raise InputError(parameters['pulse'],"Pulse height parameter exceeds hardware limits.")
+ raise InputError(parameters['pulse'],
+ "Pulse height parameter exceeds hardware limits.")
if (parameters['period'] < 1 or parameters['period'] > 1000):
- raise InputError(parameters['period'], "Period parameter outside limits.")
+ raise InputError(parameters['period'],
+ "Period parameter outside limits.")
if (parameters['width'] < 1 or parameters['width'] > 1000):
- raise InputError(parameters['width'], "Width parameter outside limits.")
+ raise InputError(parameters['width'],
+ "Width parameter outside limits.")
if parameters['period'] <= parameters['width']:
- raise InputError(parameters['width'],"Width must be less than period.")
+ raise InputError(parameters['width'],
+ "Width must be less than period.")
if parameters['start'] == parameters['stop']:
- raise InputError(parameters['start'],"Start cannot equal Stop.")
+ raise InputError(parameters['start'],
+ "Start cannot equal Stop.")
self.recv_p, self.send_p = multiprocessing.Pipe(duplex=True)
self.current_exp = comm.dpv_exp(parameters, self.send_p)
@@ -475,47 +558,62 @@ class main:
for i in self.current_exp.commands:
self.rawbuffer.insert_at_cursor(i)
- self.current_exp.run_wrapper(self.serial_liststore.get_value(self.serial_combobox.get_active_iter(), 0))
+ self.current_exp.run_wrapper(
+ self.serial_liststore.get_value(
+ self.serial_combobox.get_active_iter(), 0))
self.send_p.close()
- self.plot_proc = gobject.timeout_add(200, self.experiment_running_plot)
+ self.plot_proc = gobject.timeout_add(200,
+ self.experiment_running_plot)
gobject.idle_add(self.experiment_running)
return
else:
- self.statusbar.push(self.error_context_id, "Experiment not yet implemented.")
+ self.statusbar.push(self.error_context_id,
+ "Experiment not yet implemented.")
exceptions()
except ValueError:
- self.statusbar.push(self.error_context_id, "Experiment parameters must be integers.")
+ self.statusbar.push(self.error_context_id,
+ "Experiment parameters must be integers.")
exceptions()
- except InputError as e:
- self.statusbar.push(self.error_context_id, e.msg)
+ except InputError as err:
+ self.statusbar.push(self.error_context_id, err.msg)
exceptions()
except SerialException:
- self.statusbar.push(self.error_context_id, "Could not establish serial connection.")
+ self.statusbar.push(self.error_context_id,
+ "Could not establish serial connection.")
exceptions()
- except AssertionError as e:
- self.statusbar.push(self.error_context_id, str(e))
+ except AssertionError as err:
+ self.statusbar.push(self.error_context_id, str(err))
exceptions()
def experiment_running(self):
+ """Receive data from experiment process and add to current_exp.data.
+ Run in GTK main loop.
+
+ Returns:
+ True -- when experiment is continuing to keep function in GTK's queue.
+ False -- when experiment process signals EOFError or IOError to remove
+ function from GTK's queue.
+ """
try:
if self.recv_p.poll():
self.line, data = self.recv_p.recv()
if self.line > self.lastdataline:
- self.current_exp.data += [[],[]]
+ self.current_exp.data += [[], []]
if len(data) > 2:
- self.current_exp.data_extra += [[],[]]
+ self.current_exp.data_extra += [[], []]
self.lastdataline = self.line
for i in range(2):
self.current_exp.data[2*self.line+i].append(data[i])
- if len(data) > 2:
- self.current_exp.data_extra[2*self.line+i].append(data[i])
+ if len(data) > 2:
+ self.current_exp.data_extra[2*self.line+i].append(
+ data[i])
else:
time.sleep(.001)
return True
@@ -527,17 +625,25 @@ class main:
return False
def experiment_running_plot(self):
+ """Plot all data in current_exp.data.
+ Run in GTK main loop. Always returns True so must be manually
+ removed from GTK's queue.
+ """
if self.line > self.lastline:
self.plot.addline()
- self.plot.updateline(self.current_exp, self.lastline) #make sure all of last line is added
+ # make sure all of last line is added
+ self.plot.updateline(self.current_exp, self.lastline)
self.lastline = self.line
self.plot.updateline(self.current_exp, self.line)
self.plot.redraw()
return True
def experiment_done(self):
- gobject.source_remove(self.plot_proc) #stop automatic plot update
- self.experiment_running_plot() #make sure all data updated on plot
+ """Clean up after data acquisition is complete. Update plot and
+ copy data to raw data tab. Saves data if autosave enabled.
+ """
+ gobject.source_remove(self.plot_proc) # stop automatic plot update
+ self.experiment_running_plot() # make sure all data updated on plot
self.databuffer.set_text("")
self.databuffer.place_cursor(self.databuffer.get_start_iter())
@@ -557,8 +663,10 @@ class main:
self.databuffer.insert_at_cursor("\n")
if self.autosave_checkbox.get_active():
- save.autoSave(self.current_exp, self.autosavedir_button, self.autosavename.get_text(), self.expnumber)
- save.autoPlot(self.plot, self.autosavedir_button, self.autosavename.get_text(), self.expnumber)
+ save.autoSave(self.current_exp, self.autosavedir_button,
+ self.autosavename.get_text(), self.expnumber)
+ save.autoPlot(self.plot, self.autosavedir_button,
+ self.autosavename.get_text(), self.expnumber)
self.expnumber += 1
if self.dropbot_enabled == True:
@@ -566,33 +674,40 @@ class main:
self.dropbot_triggered = False
print "expdone"
self.microdrop.reply(microdrop.EXPFINISHED)
- self.microdrop_proc = gobject.timeout_add(500, self.microdrop_listen)
+ self.microdrop_proc = gobject.timeout_add(500,
+ self.microdrop_listen)
self.spinner.stop()
self.startbutton.set_sensitive(True)
self.stopbutton.set_sensitive(False)
def on_pot_stop_clicked(self, data=None):
+ """Stop current experiment. Signals experiment process to stop."""
if self.recv_p:
print "stop"
self.recv_p.send('a')
def on_file_save_exp_activate(self, menuitem, data=None):
+ """Activate dialogue to save current experiment data. """
if self.current_exp:
save_inst = save.manSave(self.current_exp)
def on_file_save_plot_activate(self, menuitem, data=None):
+ """Activate dialogue to save current plot."""
save_inst = save.plotSave(self.plot)
def on_menu_dropbot_connect_activate(self, menuitem, data=None):
+ """Listen for remote control connection from µDrop."""
self.microdrop = microdrop.microdropConnection()
self.dropbot_enabled = True
self.menu_dropbot_connect.set_sensitive(False)
self.menu_dropbot_disconnect.set_sensitive(True)
- self.statusbar.push(self.message_context_id, "Waiting for µDrop to connect…")
+ self.statusbar.push(self.message_context_id,
+ "Waiting for µDrop to connect…")
self.microdrop_proc = gobject.timeout_add(500, self.microdrop_listen)
def on_menu_dropbot_disconnect_activate(self, menuitem, data= None):
+ """Disconnect µDrop connection and stop listening."""
gobject.source_remove(self.microdrop_proc)
self.microdrop.reset()
del self.microdrop
@@ -601,6 +716,10 @@ class main:
self.menu_dropbot_disconnect.set_sensitive(False)
def microdrop_listen(self):
+ """Manage signals from µDrop. Handles initial handshake and
+ subsequent commands. Must be added to GTK's main loop to
+ run periodically.
+ """
drdy, data = self.microdrop.listen()
if drdy == False:
return True
@@ -623,10 +742,8 @@ class main:
return True
-
-
if __name__ == "__main__":
multiprocessing.freeze_support()
gobject.threads_init()
- main = main()
+ MAIN = Main()
gtk.main()
\ No newline at end of file