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Unverified Commit e97c77f3 authored by Erica Y. Scott's avatar Erica Y. Scott Committed by GitHub
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Update README.md

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......@@ -9,14 +9,17 @@ The provided scripts go through mapping, parsing fasta headers (barcodes and UMI
2. Align with Star Aligner
3. Collapse redundant UMIs
4. Parse and separate unique cell barcodes
5. Gather gene count data (FeatureCounts)
5. Gather gene count data (FeatureCounts)
RFigureScripts: TPM normalization, figure generation, DGE with EdgeR, UMAP implementation
DependentScripts: FeatureCounts and barcode demuliplexing scripts.
## Publication
pending
pending:
*Lamanna, J.*,*Scott, E.Y.*, *Edwards, H.*, Chamberlain, M.D., Dryden, M.D.M., Peng, J., Mair, B., Lee, A., Sklavounos, A.A., Abbas, F., Moffat, J. & A.R. Wheeler. "Digital Microfluidic Isolation of Single Cells for - Omics" 2020.
*Lamanna, J.,Scott, E.Y., Edwards, H. are Co-first authors*
### Authors of scripts
Erica Y. Scott: Scripts 1-5 and Figure scripts 1-7
Erica Y. Scott: Scripts 1-5 and Figure scripts 1-7
Harrison Edwards: python barcode parser scripts within DependentScripts/
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